Information for 10-SCCAATNRCG (Motif 16)

T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
Reverse Opposite:
G A T C C T A G A G T C A C T G C T G A C G A T A C G T A T C G A C T G A T G C
p-value:1e-10
log p-value:-2.371e+01
Information Content per bp:1.483
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.84%
Number of Background Sequences with motif461.4
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets46.0 +/- 24.0bp
Average Position of motif in Background50.4 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----SCCAATNRCG
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-SCCAATNRCG
AGCCAATCGG-
 A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-SCCAATNRCG
TGCCAA-----
 A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---SCCAATNRCG
CGTGCCAAG----
 A C G T A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------SCCAATNRCG
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---SCCAATNRCG
GGTGCCAAGT---
 A C G T A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--SCCAATNRCG
ATGCCAACC---
 A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SCCAATNRCG
TTCCCCCTAC--
 A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--SCCAATNRCG
CTGCCCGCA---
 A C G T A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-SCCAATNRCG
GGCCATTAAC-
 A C G T T A C G T G A C A T G C T G C A G C T A G A C T T G A C T C A G G A T C C T A G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T