Information for 20-AGAAASAGTAGGD (Motif 27)

C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
Reverse Opposite:
G C T A G T A C G A T C A G C T C T G A G T A C C G A T A T C G C G A T A C G T A C G T A G T C G C A T
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.651
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets52.6 +/- 24.7bp
Average Position of motif in Background46.8 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPIC/MA0687.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAAASAGTAGGD-
AAAAAGAGGAAGTA
 C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T A C G T
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGAAASAGTAGGD
-GAAAGTGAAAGT
 C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGAAASAGTAGGD
ATGCTAAAAATAGAA---
 A C G T A C G T A C G T A C G T A C G T C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAAASAGTAGGD
DCYAAAAATAGM----
 A C G T A C G T A C G T C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGAAASAGTAGGD--
---CACAGCAGGGGG
 C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGAAASAGTAGGD
--DCTCAGCAGG-
 C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGAAASAGTAGGD
TGTAAACAGGA---
 A C G T C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGAAASAGTAGGD
-GAAACTGAAACT
 C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGAAASAGTAGGD
KCCAAAAATAGC----
 A C G T A C G T A C G T C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAAASAGTAGGD--
GAGCACAGCAGGACA
 C G T A T C A G G T C A T G C A C G T A T A G C C G T A C A T G G A C T C T G A C T A G C A T G C G A T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A