Information for 2-CCACAAGRKG (Motif 2)

A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
Reverse Opposite:
A G T C G T C A A G C T A G T C A G C T A C G T A C T G A C G T A C T G A C T G
p-value:1e-41
log p-value:-9.579e+01
Information Content per bp:1.826
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.9 +/- 26.5bp
Average Position of motif in Background61.0 +/- 3.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAGRKG-------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CCACAAGRKG------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CCACAAGRKG---------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZNF354C/MA0130.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCACAAGRKG
ATCCAC------
 A C G T A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCACAAGRKG
NWAACCACADNN--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCACAAGRKG
GCCACGTG---
 A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAGRKG
AAACCACAGAN--
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCACAAGRKG
CCACGTGGNN
 A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAGRKG
AAACCACAGC---
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCACAAGRKG
GTCACATGAY-
 A C G T A G T C A G T C C G T A A G T C G T C A C T G A A C T G C T G A A C G T A C T G
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T