Information for 9-CCTTGTGCTC (Motif 29)

A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
Reverse Opposite:
T C A G C G T A A C T G T A G C G C T A G T A C G T C A C G T A C T A G T C A G
p-value:1e-6
log p-value:-1.529e+01
Information Content per bp:1.748
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif9.60%
Number of Background Sequences with motif2343.1
Percentage of Background Sequences with motif4.77%
Average Position of motif in Targets38.0 +/- 26.1bp
Average Position of motif in Background49.3 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2/MA0505.1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGTGCTC
GCTGACCTTGAACTN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGTGCTC
TGACCTTGACCT-
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGTGCTC
TGACCTTGACCT-
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CCTTGTGCTC
-----NGCTN
 A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGTGCTC
CCACCTGTTGCAT
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

SCRT1/MA0743.1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGTGCTC
ANCCACCTGTTGCNC
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCTTGTGCTC--
GAGCCCTTGTCCCTAA
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCTTGTGCTC--
------GCTCCG
 A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTTGTGCTC
GCTCGGSCTC
 A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

Myc/MA0147.2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTTGTGCTC
CCATGTGCTT
 A G T C A G T C A C G T A C G T C A T G C G A T A T C G G T A C A C G T A G T C
T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T