Information for 8-GAGAMCCTGCTGGTTC (Motif 13)

T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
Reverse Opposite:
C A T G C G T A C T G A A G T C A G T C G C T A C T A G A G T C C G T A A C T G A T C G A C G T A C G T A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.432e+01
Information Content per bp:1.799
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.5 +/- 16.2bp
Average Position of motif in Background33.4 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0024.1_Gcm1_1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGAMCCTGCTGGTTC--
--NNNNATGCGGGTNNNN
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C A C G T A C G T
A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

GCM1/MA0646.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
-----CATGCGGGTAC
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
-----TATGCGGGTA-
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
-----CCTGCTGAGH-
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
SNGCACCTGCHS----
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GAGAMCCTGCTGGTTC
--CCCCCTGCTGTG--
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GAGAMCCTGCTGGTTC
-AGATGCTRCTRCCHT
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
AAGACCCYYN------
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
GGCCYCCTGCTGDGH-
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GAGAMCCTGCTGGTTC
-AGCAGCTGCT-----
 T A C G C G T A A C T G G T C A G T C A A T G C G T A C A C G T A C T G A G T C C G A T A C T G A C T G A G C T A C G T G T A C
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T