Information for 20-GGRARAAAGKGGR (Motif 40)

A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
Reverse Opposite:
A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T A G C T A C G T A G T C A G T C G T A C
p-value:1e-5
log p-value:-1.164e+01
Information Content per bp:1.868
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.6 +/- 26.4bp
Average Position of motif in Background54.2 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGRARAAAGKGGR
GGAACAAAGR---
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGRARAAAGKGGR--
-GGAGAAAGGTGCGA
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G A C G T A C G T
A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

SPI1/MA0080.4/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGRARAAAGKGGR----
---AAAAAGCGGAAGTA
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C G T A C G T A C G T A T A C G T G A C C T A G A T C G G T C A C G T A A T C G G A C T C G T A

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGRARAAAGKGGR
AAAACAAAGG---
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGRARAAAGKGGR
TACTGGAAAAAAAA---
 A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

SPIC/MA0687.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGRARAAAGKGGR----
---AAAAAGAGGAAGTA
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A

PLAG1/MA0163.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGRARAAAGKGGR
GGGGCCCAAGGGGG
 A C G T A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGRARAAAGKGGR
-GAACAATGGN--
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGRARAAAGKGGR
VRRACAAWGG---
 A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGRARAAAGKGGR
GTAGGGCAAAGGTCA
 A C G T A C G T A C T G A C T G C T A G C G T A C T G A C G T A C G T A C G T A C T A G A C T G A C T G A C T G C T A G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A