Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 929)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45698)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-206	-4.763e+02	0.0000	183.0	19.70%	287.9	0.63%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-154	-3.558e+02	0.0000	196.0	21.10%	702.3	1.53%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-40	-9.311e+01	0.0000	115.0	12.38%	1239.7	2.69%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-37	-8.553e+01	0.0000	193.0	20.78%	3456.6	7.51%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-34	-7.949e+01	0.0000	195.0	20.99%	3680.4	8.00%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-34	-7.934e+01	0.0000	109.0	11.73%	1300.4	2.83%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-32	-7.380e+01	0.0000	144.0	15.50%	2305.2	5.01%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-31	-7.143e+01	0.0000	132.0	14.21%	2025.7	4.40%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-29	-6.728e+01	0.0000	136.0	14.64%	2228.4	4.84%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-28	-6.670e+01	0.0000	149.0	16.04%	2619.6	5.69%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-28	-6.618e+01	0.0000	153.0	16.47%	2752.0	5.98%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-27	-6.314e+01	0.0000	111.0	11.95%	1633.3	3.55%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-26	-6.049e+01	0.0000	201.0	21.64%	4484.0	9.74%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-25	-5.884e+01	0.0000	93.0	10.01%	1253.0	2.72%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-22	-5.291e+01	0.0000	175.0	18.84%	3870.2	8.41%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-21	-5.044e+01	0.0000	111.0	11.95%	1919.3	4.17%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-21	-4.954e+01	0.0000	120.0	12.92%	2209.8	4.80%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-18	-4.306e+01	0.0000	87.0	9.36%	1417.8	3.08%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-16	-3.850e+01	0.0000	200.0	21.53%	5397.9	11.73%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-16	-3.845e+01	0.0000	86.0	9.26%	1502.6	3.26%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-16	-3.749e+01	0.0000	84.0	9.04%	1469.1	3.19%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-16	-3.705e+01	0.0000	33.0	3.55%	249.5	0.54%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-14	-3.361e+01	0.0000	54.0	5.81%	743.5	1.62%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-14	-3.291e+01	0.0000	119.0	12.81%	2726.8	5.92%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-14	-3.251e+01	0.0000	166.0	17.87%	4426.6	9.62%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-13	-3.073e+01	0.0000	240.0	25.83%	7445.0	16.18%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-13	-3.004e+01	0.0000	65.0	7.00%	1115.9	2.42%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-12	-2.981e+01	0.0000	34.0	3.66%	344.9	0.75%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-12	-2.894e+01	0.0000	50.0	5.38%	732.3	1.59%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-12	-2.809e+01	0.0000	81.0	8.72%	1653.6	3.59%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-12	-2.805e+01	0.0000	67.0	7.21%	1226.4	2.66%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-11	-2.752e+01	0.0000	28.0	3.01%	252.1	0.55%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-11	-2.715e+01	0.0000	28.0	3.01%	256.0	0.56%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-10	-2.467e+01	0.0000	47.0	5.06%	744.3	1.62%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-10	-2.427e+01	0.0000	34.0	3.66%	424.0	0.92%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-10	-2.367e+01	0.0000	65.0	7.00%	1296.3	2.82%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-9	-2.301e+01	0.0000	36.0	3.88%	493.6	1.07%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-9	-2.273e+01	0.0000	82.0	8.83%	1881.8	4.09%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-9	-2.208e+01	0.0000	23.0	2.48%	216.4	0.47%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-8	-1.898e+01	0.0000	85.0	9.15%	2150.3	4.67%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-8	-1.855e+01	0.0000	61.0	6.57%	1346.5	2.93%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-1.844e+01	0.0000	71.0	7.64%	1686.3	3.66%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.827e+01	0.0000	68.0	7.32%	1591.3	3.46%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-7	-1.810e+01	0.0000	48.0	5.17%	948.4	2.06%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-7	-1.731e+01	0.0000	27.0	2.91%	376.0	0.82%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.730e+01	0.0000	69.0	7.43%	1667.1	3.62%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-7	-1.650e+01	0.0000	52.0	5.60%	1129.2	2.45%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-7	-1.649e+01	0.0000	22.0	2.37%	271.0	0.59%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-6	-1.387e+01	0.0000	53.0	5.71%	1268.5	2.76%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-6	-1.383e+01	0.0000	65.0	7.00%	1691.6	3.68%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-5	-1.352e+01	0.0000	45.0	4.84%	1014.0	2.20%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-5	-1.345e+01	0.0000	55.0	5.92%	1356.2	2.95%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-5	-1.322e+01	0.0000	163.0	17.55%	5638.9	12.25%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.321e+01	0.0000	52.0	5.60%	1263.1	2.74%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.232e+01	0.0000	9.0	0.97%	59.3	0.13%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-5	-1.210e+01	0.0000	6.0	0.65%	21.7	0.05%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.205e+01	0.0000	27.0	2.91%	497.4	1.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.163e+01	0.0001	46.0	4.95%	1127.3	2.45%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-1.040e+01	0.0002	16.0	1.72%	233.0	0.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-4	-1.025e+01	0.0002	32.0	3.44%	712.1	1.55%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-4	-9.816e+00	0.0003	66.0	7.10%	1965.3	4.27%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-4	-9.584e+00	0.0004	16.0	1.72%	249.9	0.54%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.875e+00	0.0008	67.0	7.21%	2071.2	4.50%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-8.747e+00	0.0009	110.0	11.84%	3843.4	8.35%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-8.721e+00	0.0009	26.0	2.80%	574.1	1.25%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-8.205e+00	0.0015	12.0	1.29%	173.3	0.38%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-7.904e+00	0.0020	15.0	1.61%	261.6	0.57%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-3	-7.897e+00	0.0020	16.0	1.72%	290.9	0.63%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-7.710e+00	0.0024	15.0	1.61%	266.1	0.58%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-3	-7.418e+00	0.0031	100.0	10.76%	3560.9	7.74%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-7.378e+00	0.0032	62.0	6.67%	1989.8	4.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-6.591e+00	0.0069	105.0	11.30%	3870.7	8.41%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.561e+00	0.0070	68.0	7.32%	2305.7	5.01%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.408e+00	0.0081	147.0	15.82%	5746.5	12.49%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-6.402e+00	0.0081	13.0	1.40%	243.5	0.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.214e+00	0.0096	51.0	5.49%	1643.0	3.57%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-6.112e+00	0.0105	7.0	0.75%	87.3	0.19%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.956e+00	0.0121	277.0	29.82%	11828.2	25.70%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.900e+00	0.0126	71.0	7.64%	2497.0	5.43%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.790e+00	0.0139	28.0	3.01%	780.1	1.69%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.663e+00	0.0156	5.0	0.54%	50.0	0.11%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-5.532e+00	0.0176	115.0	12.38%	4449.7	9.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.347e+00	0.0209	75.0	8.07%	2728.0	5.93%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.191e+00	0.0241	11.0	1.18%	218.4	0.47%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-4.517e+00	0.0468	10.0	1.08%	208.6	0.45%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-4.413e+00	0.0513	17.0	1.83%	452.8	0.98%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.312e+00	0.0561	16.0	1.72%	421.4	0.92%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-4.287e+00	0.0569	87.0	9.36%	3390.7	7.37%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.192e+00	0.0618	43.0	4.63%	1498.6	3.26%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-4.153e+00	0.0635	32.0	3.44%	1049.6	2.28%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-4.142e+00	0.0636	12.0	1.29%	288.1	0.63%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-4.080e+00	0.0669	163.0	17.55%	6888.1	14.97%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-4.001e+00	0.0716	10.0	1.08%	226.2	0.49%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.935e+00	0.0757	115.0	12.38%	4708.5	10.23%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.911e+00	0.0767	79.0	8.50%	3091.9	6.72%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.890e+00	0.0775	70.0	7.53%	2696.3	5.86%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.788e+00	0.0849	13.0	1.40%	340.0	0.74%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.727e+00	0.0893	77.0	8.29%	3030.7	6.58%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.614e+00	0.0991	76.0	8.18%	3003.7	6.53%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.607e+00	0.0991	13.0	1.40%	348.0	0.76%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.490e+00	0.1099	87.0	9.36%	3518.0	7.64%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.378e+00	0.1218	13.0	1.40%	360.9	0.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.275e+00	0.1336	65.0	7.00%	2565.1	5.57%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.275e+00	0.1336	72.0	7.75%	2878.4	6.25%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.152e+00	0.1483	9.0	0.97%	226.6	0.49%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.117e+00	0.1521	12.0	1.29%	337.8	0.73%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-2.998e+00	0.1697	36.0	3.88%	1331.0	2.89%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-2.973e+00	0.1725	35.0	3.77%	1290.2	2.80%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.897e+00	0.1844	15.0	1.61%	466.4	1.01%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.859e+00	0.1897	162.0	17.44%	7131.3	15.49%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.847e+00	0.1903	8.0	0.86%	204.7	0.44%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.822e+00	0.1934	55.0	5.92%	2189.6	4.76%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-2.795e+00	0.1968	16.0	1.72%	513.4	1.12%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-2.670e+00	0.2210	73.0	7.86%	3029.2	6.58%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.645e+00	0.2248	3.0	0.32%	47.5	0.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.569e+00	0.2403	63.0	6.78%	2592.1	5.63%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.562e+00	0.2403	16.0	1.72%	531.4	1.15%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.548e+00	0.2412	3.0	0.32%	49.0	0.11%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.527e+00	0.2445	59.0	6.35%	2418.9	5.26%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-2.459e+00	0.2594	23.0	2.48%	833.0	1.81%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.457e+00	0.2594	3.0	0.32%	51.7	0.11%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.408e+00	0.2685	7.0	0.75%	188.1	0.41%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.398e+00	0.2689	5.0	0.54%	117.5	0.26%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.361e+00	0.2769	145.0	15.61%	6465.1	14.05%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.302e+00	0.2913	34.0	3.66%	1331.3	2.89%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.179e+00	0.3269	15.0	1.61%	522.7	1.14%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.171e+00	0.3269	1.0	0.11%	6.5	0.01%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.156e+00	0.3293	79.0	8.50%	3413.2	7.42%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.134e+00	0.3338	9.0	0.97%	280.9	0.61%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.125e+00	0.3345	36.0	3.88%	1446.1	3.14%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.081e+00	0.3469	25.0	2.69%	963.6	2.09%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.043e+00	0.3575	20.0	2.15%	749.4	1.63%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.986e+00	0.3755	2.0	0.22%	32.2	0.07%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.983e+00	0.3755	164.0	17.65%	7491.1	16.28%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.967e+00	0.3770	8.0	0.86%	251.7	0.55%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.962e+00	0.3770	16.0	1.72%	585.9	1.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.715e+00	0.4780	21.0	2.26%	833.0	1.81%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.705e+00	0.4795	7.0	0.75%	228.5	0.50%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.691e+00	0.4827	9.0	0.97%	312.4	0.68%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.681e+00	0.4843	8.0	0.86%	271.8	0.59%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.679e+00	0.4843	9.0	0.97%	313.2	0.68%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.637e+00	0.4987	3.0	0.32%	75.8	0.16%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.636e+00	0.4987	11.0	1.18%	402.6	0.87%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.635e+00	0.4987	22.0	2.37%	889.5	1.93%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.609e+00	0.5022	30.0	3.23%	1257.6	2.73%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.604e+00	0.5022	2.0	0.22%	41.7	0.09%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.587e+00	0.5064	17.0	1.83%	671.7	1.46%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.574e+00	0.5099	11.0	1.18%	408.6	0.89%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.510e+00	0.5394	5.0	0.54%	159.1	0.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.494e+00	0.5446	5.0	0.54%	160.6	0.35%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.484e+00	0.5467	23.0	2.48%	957.1	2.08%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.467e+00	0.5521	178.0	19.16%	8367.9	18.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.457e+00	0.5540	14.0	1.51%	553.1	1.20%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.452e+00	0.5540	13.0	1.40%	509.3	1.11%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.451e+00	0.5540	4.0	0.43%	122.6	0.27%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.449e+00	0.5540	33.0	3.55%	1425.1	3.10%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.438e+00	0.5540	20.0	2.15%	827.1	1.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.428e+00	0.5540	31.0	3.34%	1336.2	2.90%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.426e+00	0.5540	10.0	1.08%	379.5	0.82%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.404e+00	0.5589	68.0	7.32%	3088.6	6.71%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.396e+00	0.5599	35.0	3.77%	1529.9	3.32%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.371e+00	0.5707	15.0	1.61%	609.4	1.32%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.369e+00	0.5707	12.0	1.29%	474.2	1.03%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.354e+00	0.5733	67.0	7.21%	3055.5	6.64%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.327e+00	0.5854	7.0	0.75%	257.2	0.56%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.318e+00	0.5869	2.0	0.22%	50.8	0.11%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.295e+00	0.5968	3.0	0.32%	90.8	0.20%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.295e+00	0.5968	19.0	2.05%	803.0	1.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.270e+00	0.6047	7.0	0.75%	262.5	0.57%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.262e+00	0.6062	53.0	5.71%	2413.6	5.24%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.242e+00	0.6149	8.0	0.86%	309.5	0.67%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.234e+00	0.6162	16.0	1.72%	674.7	1.47%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.220e+00	0.6213	13.0	1.40%	538.9	1.17%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.218e+00	0.6213	5.0	0.54%	179.2	0.39%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.210e+00	0.6213	89.0	9.58%	4160.6	9.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.205e+00	0.6213	35.0	3.77%	1571.0	3.41%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.199e+00	0.6213	12.0	1.29%	495.6	1.08%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.193e+00	0.6213	88.0	9.47%	4118.7	8.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.188e+00	0.6213	18.0	1.94%	774.0	1.68%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.164e+00	0.6313	8.0	0.86%	317.4	0.69%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.151e+00	0.6362	23.0	2.48%	1015.2	2.21%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.124e+00	0.6501	102.0	10.98%	4824.7	10.48%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.099e+00	0.6627	27.0	2.91%	1215.7	2.64%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.083e+00	0.6701	17.0	1.83%	745.6	1.62%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.081e+00	0.6701	3.0	0.32%	102.9	0.22%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.081e+00	0.6701	3.0	0.32%	102.9	0.22%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.063e+00	0.6726	1.0	0.11%	21.4	0.05%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.047e+00	0.6797	53.0	5.71%	2477.5	5.38%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.039e+00	0.6812	8.0	0.86%	332.0	0.72%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.030e+00	0.6843	25.0	2.69%	1135.6	2.47%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.014e+00	0.6910	5.0	0.54%	196.1	0.43%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.013e+00	0.6910	16.0	1.72%	710.2	1.54%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.012e+00	0.6910	4.0	0.43%	151.7	0.33%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-9.877e-01	0.6988	15.0	1.61%	667.5	1.45%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.876e-01	0.6988	12.0	1.29%	525.4	1.14%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.798e-01	0.6988	9.0	0.97%	385.3	0.84%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.722e-01	0.6989	52.0	5.60%	2454.0	5.33%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.617e-01	0.7027	14.0	1.51%	624.6	1.36%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.544e-01	0.7043	36.0	3.88%	1683.7	3.66%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.447e-01	0.7076	20.0	2.15%	914.9	1.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.402e-01	0.7076	18.0	1.94%	819.7	1.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.285e-01	0.7120	4.0	0.43%	158.6	0.34%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-9.271e-01	0.7120	6.0	0.65%	251.7	0.55%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.265e-01	0.7120	36.0	3.88%	1691.1	3.67%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.226e-01	0.7120	26.0	2.80%	1208.7	2.63%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.938e-01	0.7229	20.0	2.15%	925.7	2.01%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.741e-01	0.7337	19.0	2.05%	881.6	1.92%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.663e-01	0.7359	6.0	0.65%	258.2	0.56%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.646e-01	0.7359	16.0	1.72%	738.6	1.60%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.607e-01	0.7359	13.0	1.40%	594.7	1.29%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.451e-01	0.7410	20.0	2.15%	936.9	2.04%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-8.422e-01	0.7410	50.0	5.38%	2401.2	5.22%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.392e-01	0.7410	8.0	0.86%	357.1	0.78%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.316e-01	0.7410	12.0	1.29%	551.9	1.20%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.195e-01	0.7460	24.0	2.58%	1137.2	2.47%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-8.085e-01	0.7508	15.0	1.61%	702.0	1.53%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.006e-01	0.7532	5.0	0.54%	218.2	0.47%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.951e-01	0.7540	59.0	6.35%	2861.9	6.22%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-7.917e-01	0.7540	8.0	0.86%	364.4	0.79%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.891e-01	0.7540	43.0	4.63%	2077.8	4.51%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.863e-01	0.7540	20.0	2.15%	950.1	2.06%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.828e-01	0.7540	3.0	0.32%	124.8	0.27%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.795e-01	0.7540	81.0	8.72%	3951.7	8.59%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-7.716e-01	0.7540	3.0	0.32%	125.8	0.27%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.539e-01	0.7612	4.0	0.43%	176.0	0.38%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.417e-01	0.7671	19.0	2.05%	912.6	1.98%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-7.415e-01	0.7671	12.0	1.29%	568.5	1.24%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.141e-01	0.7817	41.0	4.41%	2006.3	4.36%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.117e-01	0.7817	110.0	11.84%	5420.7	11.78%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.091e-01	0.7817	4.0	0.43%	180.7	0.39%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.927e-01	0.7882	14.0	1.51%	677.0	1.47%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.797e-01	0.7951	1.0	0.11%	36.0	0.08%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.757e-01	0.7951	110.0	11.84%	5442.2	11.82%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.725e-01	0.7951	25.0	2.69%	1228.5	2.67%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.585e-01	0.8018	3.0	0.32%	136.3	0.30%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.474e-01	0.8073	49.0	5.27%	2430.9	5.28%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.118e-01	0.8330	7.0	0.75%	344.8	0.75%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.043e-01	0.8358	13.0	1.40%	648.4	1.41%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.999e-01	0.8359	29.0	3.12%	1452.5	3.16%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.832e-01	0.8464	76.0	8.18%	3808.5	8.27%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-5.823e-01	0.8464	14.0	1.51%	704.1	1.53%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.789e-01	0.8464	6.0	0.65%	299.4	0.65%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.746e-01	0.8464	18.0	1.94%	908.2	1.97%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.673e-01	0.8464	14.0	1.51%	708.4	1.54%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-5.667e-01	0.8464	118.0	12.70%	5913.5	12.85%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.619e-01	0.8464	12.0	1.29%	608.1	1.32%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.617e-01	0.8464	4.0	0.43%	199.8	0.43%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.598e-01	0.8464	77.0	8.29%	3872.1	8.41%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.590e-01	0.8464	1.0	0.11%	42.1	0.09%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.497e-01	0.8464	2.0	0.22%	96.7	0.21%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.398e-01	0.8464	6.0	0.65%	306.9	0.67%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.298e-01	0.8471	1.0	0.11%	44.2	0.10%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.298e-01	0.8471	1.0	0.11%	44.0	0.10%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-5.139e-01	0.8572	14.0	1.51%	723.7	1.57%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.031e-01	0.8631	2.0	0.22%	101.9	0.22%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.021e-01	0.8631	17.0	1.83%	880.0	1.91%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.895e-01	0.8681	1.0	0.11%	47.2	0.10%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.894e-01	0.8681	76.0	8.18%	3867.8	8.40%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.787e-01	0.8708	42.0	4.52%	2160.9	4.70%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.786e-01	0.8708	4.0	0.43%	212.7	0.46%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.724e-01	0.8708	74.0	7.97%	3778.2	8.21%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.554e-01	0.8811	14.0	1.51%	741.2	1.61%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.439e-01	0.8879	60.0	6.46%	3091.1	6.72%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.283e-01	0.8985	16.0	1.72%	854.2	1.86%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.127e-01	0.9091	114.0	12.27%	5838.3	12.68%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.095e-01	0.9091	1.0	0.11%	54.9	0.12%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.090e-01	0.9091	15.0	1.61%	809.9	1.76%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.079e-01	0.9091	2.0	0.22%	113.7	0.25%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.998e-01	0.9091	12.0	1.29%	655.7	1.42%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.894e-01	0.9133	27.0	2.91%	1440.3	3.13%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.830e-01	0.9158	4.0	0.43%	230.1	0.50%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-3.802e-01	0.9158	1.0	0.11%	57.7	0.13%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.721e-01	0.9191	3.0	0.32%	176.1	0.38%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.668e-01	0.9205	3.0	0.32%	178.0	0.39%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-3.631e-01	0.9207	13.0	1.40%	721.3	1.57%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.620e-01	0.9207	1.0	0.11%	59.7	0.13%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.579e-01	0.9207	10.0	1.08%	563.4	1.22%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.563e-01	0.9207	33.0	3.55%	1768.9	3.84%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.546e-01	0.9207	7.0	0.75%	402.1	0.87%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.408e-01	0.9245	15.0	1.61%	836.4	1.82%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.406e-01	0.9245	14.0	1.51%	783.9	1.70%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.381e-01	0.9245	4.0	0.43%	240.3	0.52%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-3.330e-01	0.9245	38.0	4.09%	2041.5	4.44%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.278e-01	0.9245	5.0	0.54%	299.1	0.65%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.970e-01	0.9490	79.0	8.50%	4176.9	9.08%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.959e-01	0.9490	5.0	0.54%	308.9	0.67%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.861e-01	0.9528	7.0	0.75%	424.1	0.92%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.852e-01	0.9528	1.0	0.11%	70.0	0.15%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.733e-01	0.9584	12.0	1.29%	705.7	1.53%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.709e-01	0.9584	23.0	2.48%	1297.1	2.82%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.680e-01	0.9584	43.0	4.63%	2349.4	5.10%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.669e-01	0.9584	5.0	0.54%	317.0	0.69%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.610e-01	0.9584	49.0	5.27%	2667.3	5.80%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.609e-01	0.9584	2.0	0.22%	139.6	0.30%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.388e-01	0.9718	14.0	1.51%	832.5	1.81%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.165e-01	0.9903	1.0	0.11%	81.8	0.18%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.162e-01	0.9903	6.0	0.65%	394.5	0.86%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.102e-01	0.9903	12.0	1.29%	738.8	1.61%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.069e-01	0.9903	11.0	1.18%	684.3	1.49%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.024e-01	0.9910	1.0	0.11%	84.0	0.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.022e-01	0.9910	2.0	0.22%	154.6	0.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.010e-01	0.9910	57.0	6.14%	3146.6	6.84%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.927e-01	0.9910	5.0	0.54%	345.6	0.75%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.899e-01	0.9910	27.0	2.91%	1572.9	3.42%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.877e-01	0.9910	6.0	0.65%	407.3	0.88%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.717e-01	1.0000	19.0	2.05%	1153.3	2.51%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.710e-01	1.0000	108.0	11.63%	5831.8	12.67%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.687e-01	1.0000	80.0	8.61%	4388.7	9.54%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.584e-01	1.0000	21.0	2.26%	1275.2	2.77%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.541e-01	1.0000	48.0	5.17%	2733.8	5.94%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.479e-01	1.0000	9.0	0.97%	607.5	1.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.453e-01	1.0000	21.0	2.26%	1288.1	2.80%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.443e-01	1.0000	15.0	1.61%	954.1	2.07%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.392e-01	1.0000	1.0	0.11%	101.6	0.22%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.391e-01	1.0000	6.0	0.65%	434.4	0.94%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.238e-01	1.0000	36.0	3.88%	2134.7	4.64%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.193e-01	1.0000	40.0	4.31%	2357.6	5.12%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.107e-01	1.0000	16.0	1.72%	1045.0	2.27%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.098e-01	1.0000	1.0	0.11%	112.6	0.24%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.096e-01	1.0000	6.0	0.65%	455.0	0.99%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.082e-01	1.0000	5.0	0.54%	393.7	0.86%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.021e-01	1.0000	14.0	1.51%	940.6	2.04%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.002e-01	1.0000	17.0	1.83%	1115.4	2.42%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.353e-02	1.0000	132.0	14.21%	7250.1	15.75%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.112e-02	1.0000	3.0	0.32%	273.8	0.59%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.856e-02	1.0000	65.0	7.00%	3757.9	8.16%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.460e-02	1.0000	78.0	8.40%	4457.7	9.69%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.105e-02	1.0000	47.0	5.06%	2834.1	6.16%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.738e-02	1.0000	11.0	1.18%	809.9	1.76%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.457e-02	1.0000	3.0	0.32%	296.8	0.64%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.685e-02	1.0000	22.0	2.37%	1477.1	3.21%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.387e-02	1.0000	9.0	0.97%	708.6	1.54%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.275e-02	1.0000	9.0	0.97%	710.1	1.54%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.042e-02	1.0000	1.0	0.11%	149.3	0.32%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.367e-02	1.0000	10.0	1.08%	791.9	1.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.159e-02	1.0000	49.0	5.27%	3041.7	6.61%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.696e-02	1.0000	1.0	0.11%	164.1	0.36%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.008e-02	1.0000	1.0	0.11%	174.7	0.38%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.882e-02	1.0000	4.0	0.43%	424.1	0.92%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.751e-02	1.0000	13.0	1.40%	1025.9	2.23%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.341e-02	1.0000	10.0	1.08%	850.1	1.85%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.335e-02	1.0000	2.0	0.22%	280.4	0.61%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.895e-02	1.0000	5.0	0.54%	527.1	1.15%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.007e-03	1.0000	4.0	0.43%	556.7	1.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.764e-03	1.0000	138.0	14.85%	8479.1	18.42%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.648e-03	1.0000	6.0	0.65%	777.0	1.69%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.244e-03	1.0000	39.0	4.20%	2967.5	6.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.071e-03	1.0000	56.0	6.03%	3994.5	8.68%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.980e-04	1.0000	68.0	7.32%	4826.0	10.49%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	35.8	0.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	34.8	0.08%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	14.2	0.03%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	69.5	0.15%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	64.1	0.14%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	72.1	0.16%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.2	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	3.1	0.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	12.2	0.03%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	30.5	0.07%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	15.4	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.7	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	15.5	0.03%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	20.1	0.04%