Information for 11-GCAGCAGAGA (Motif 11)

T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A
Reverse Opposite:
G A C T A G T C G C A T A G T C A G C T A C T G A G T C C A G T C T A G A G T C
p-value:1e-11
log p-value:-2.632e+01
Information Content per bp:1.696
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif4.95%
Number of Background Sequences with motif682.2
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets46.3 +/- 25.1bp
Average Position of motif in Background49.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGAGA
CGCAGCTGCG-
 A C G T T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCAGCAGAGA---
---GCAGTGATTT
 T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGA
ANCAGCTG---
 A C G T T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGA-
CACAGCAGGGGG
 A C G T T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAGCAGAGA-----
GNNACCGAGAATNNN
 T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGCAGAGA--
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGAGA---
--TGCTGTGATTT
 T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAGCAGAGA
GCAGCTGTNN
 T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A
T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCAGCAGAGA
-CAGCC----
 T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCAGAGA
NNAGCAGCTGCT-
 A C G T A C G T A C G T T A C G A G T C G T C A T C A G T G A C T C G A T C A G C G T A C T A G C T G A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T