Information for 3-AGCCAATGGA (Motif 18)

T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
Reverse Opposite:
C A G T A G T C A T G C T G C A C G A T A C G T A C T G T A C G A G T C A G C T
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.682
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif8.13%
Number of Background Sequences with motif1407.5
Percentage of Background Sequences with motif2.94%
Average Position of motif in Targets52.8 +/- 28.3bp
Average Position of motif in Background48.5 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATGGA
ACTAGCCAATCA-
 A C G T A C G T A C G T T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGCCAATGGA
AGCCAATCGG
 T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGCCAATGGA
TGCCAA----
 T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAATGGA
AAAACAATGG-
 A C G T T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATGGA
CGTGCCAAG---
 A C G T A C G T T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAATGGA
VRAACAATGG-
 A C G T T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGCCAATGGA
-RACAAWGG-
 T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGCCAATGGA
-AACAAAGG-
 T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGCCAATGGA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCCAATGGA
RAACAATGGN
 T C G A T C A G A T G C G T A C G T C A G C T A A C G T A T C G T C A G G T C A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C