Information for 19-TTTTAATCAG (Motif 34)

A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
Reverse Opposite:
A T G C A G C T A C T G C G T A A C G T A C G T C G T A C G T A C G T A C G T A
p-value:1e-6
log p-value:-1.567e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.7 +/- 31.6bp
Average Position of motif in Background42.7 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTTTAATCAG
-TTTAAT---
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TTTTAATCAG
ATATTAATTAA
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TTTTAATCAG
--TTAATCCG
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

GSX2/MA0893.1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TTTTAATCAG-
-NTTAATTAGN
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G A C G T
A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAATCAG----
NNNTTTTAATTAANNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTTAATCAG
TTTTTATTGC
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TTTTAATCAG
ATTTGAATT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TTTTAATCAG
--TTAATTAN
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTTTAATCAG
--TTAATCCT
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TTTTAATCAG
--NTAATTGG
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C C T G A A T C G
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G