Information for 3-CCAKATTCATATC (Motif 3)

G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C
Reverse Opposite:
A C T G G T C A A C G T C G T A A C G T A T C G C G T A C G T A A C G T G T C A A C G T C A T G A C T G
p-value:1e-15
log p-value:-3.612e+01
Information Content per bp:1.837
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 20.9bp
Average Position of motif in Background46.0 +/- 41.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAKATTCATATC
GAATATTCAT---
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCAKATTCATATC--
GACCACATTCATACAAT
 A C G T A C G T G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCAKATTCATATC---
--ACATTCATGACACG
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0166.1_Six6_2/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCAKATTCATATC-----
-AATNTTGATACCCTATN
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

GATA2/MA0036.2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAKATTCATATC---
--AGATTCTTATCTGT
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAKATTCATATC
GHATATKCAT---
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAKATTCATATC--
NNAGATNVNWATCTN
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAKATTCATATC------
--NNNCTGATATCTCNNNN
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCAKATTCATATC
--ATTTGCATAT-
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C
A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCAKATTCATATC
-CGGTTTCAAA--
 G T A C G T A C C G T A A C G T T C G A A C G T A C G T A T G C C G T A A C G T C G T A A C G T A G T C
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T