Information for 12-AGGCTAGGGCAAA (Motif 19)

C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
Reverse Opposite:
A G C T A C G T A G C T A C T G G T A C A G T C A G T C G C A T C T G A A C T G A T G C A T G C C G A T
p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.684
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif126.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets51.5 +/- 23.5bp
Average Position of motif in Background54.8 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGCTAGGGCAAA---
NNNNTTGGGCACNNCN
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGGCTAGGGCAAA-----
----TAGGGCAAAGGTCA
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGGCTAGGGCAAA-----
---GTAGGGCAAAGGTCA
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGGCTAGGGCAAA-----
----TGGGGCAAAGGTCA
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGCTAGGGCAAA
ACATGCCCGGGCAT-
 A C G T A C G T C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTAGGGCAAA
CAGGCCNNGGCCNN
 A C G T C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGGCTAGGGCAAA
---NGTGGGCAT-
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGCTAGGGCAAA
AAGGCAAGTGT---
 A C G T C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGCTAGGGCAAA
-GGGGGGGG----
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGGCTAGGGCAAA
---TNNGGGCAG-
 C G T A A T C G A T C G T G A C G A C T C G T A C T A G T A C G A C T G T A G C T C G A T G C A C T G A
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T