Information for 5-GRKGGCCATCGCCTGG (Motif 9)

T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
Reverse Opposite:
A T G C A T G C C G T A A C T G A T C G G T A C A T C G C G T A C G A T A C T G C T A G G A T C A G T C G T C A G A T C A G T C
p-value:1e-10
log p-value:-2.532e+01
Information Content per bp:1.687
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif50.8
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.8 +/- 26.1bp
Average Position of motif in Background56.3 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GRKGGCCATCGCCTGG
NGTTGCCATGGCAA--
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GRKGGCCATCGCCTGG
GGTTGCCATGGCAA--
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GRKGGCCATCGCCTGG
GTCCGCCATTA-----
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GRKGGCCATCGCCTGG
----GTCATN------
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GRKGGCCATCGCCTGG
---GGCCATTAAC---
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GRKGGCCATCGCCTGG
GARTGGTCATCGCCC--
 A C G T T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GRKGGCCATCGCCTGG
CGTTGCCATGGCAACG
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GRKGGCCATCGCCTGG
CGTTGCCATGGCAACG
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GRKGGCCATCGCCTGG
CGGTTGCCATGGCAAC-
 A C G T T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GRKGGCCATCGCCTGG
KGTTGCCATGGCAAC-
 T C A G C T A G C A G T T C A G C T A G A G T C A G T C C G T A A C G T A T G C C A T G A T G C G T A C C G A T A T C G A T C G
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T