Information for 17-TGCATGTATCATG (Motif 36)

A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
Reverse Opposite:
A T G C C G T A A C G T C T A G C T G A C G A T C T G A G T A C C T G A A C G T A C T G A T G C C G T A
p-value:1e-5
log p-value:-1.263e+01
Information Content per bp:1.841
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.4 +/- 19.7bp
Average Position of motif in Background77.7 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGCATGTATCATG
--AATGTATCAAT
 A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGTATCATG
ANTNTTACATGTATNTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGCATGTATCATG-
ATGAATWATTCATGA
 A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGTATCATG
NNTATTACATGTANNNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCATGTATCATG-
ATGCATWATGCATRW
 A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCATGTATCATG
ATGAATAATTAATG
 A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGTATCATG
ANTATTACATGTANNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCATGTATCATG--
ATGCATAATTAATGAG
 A C G T A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGCATGTATCATG
-GCACGTACCC--
 A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGCATGTATCATG
-GCACGTAY----
 A C G T A T C G A G T C C G T A A G C T A C T G A G C T C G T A A G C T A G T C C G T A A C G T A T C G
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T