Information for 16-CTGCTGCTGAGCGTCA (Motif 35)

T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A A G T C A C T G A G T C C G A T A G T C C G T A A C T G A G T C C T G A A C T G A G T C C G T A A T C G
p-value:1e-6
log p-value:-1.470e+01
Information Content per bp:1.929
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.0 +/- 30.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTGCTGAGCGTCA
CCCCCTGCTGTG-----
 A C G T T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGCTGCTGAGCGTCA
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTGCTGAGCGTCA
TNTCCTGCTGTGNNG--
 A C G T T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTGCTGAGCGTCA
TCNCCTGCTGNGNNN--
 A C G T T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTGCTGAGCGTCA
NNTCCTGCTGTGNNN--
 A C G T T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTGCTGCTGAGCGTCA
--CCTGCTGAGH----
 T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGCTGCTGAGCGTCA
-KGTTGCTAGGMAACA
 T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGCTGCTGAGCGTCA
-GYCTGGYYTNTGTCA
 T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTGCTGCTGAGCGTCA
CAGCTGNT--------
 T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------CTGCTGCTGAGCGTCA
NNNNAGCAGCTGCTGAN-----
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C A C G T A C T G A G T C A G C T A C T G A G T C A C G T A C T G C G T A A C T G G T A C A C T G A C G T A G T C G T C A
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T A C G T