Information for 15-HTCCTGSCWGGCV (Motif 26)

G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
Reverse Opposite:
A G T C C T A G A G T C G T A C C G A T A C T G T A G C A T G C C T G A A C T G A C T G G T C A C T G A
p-value:1e-7
log p-value:-1.794e+01
Information Content per bp:1.693
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.29%
Number of Background Sequences with motif337.8
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets52.5 +/- 24.5bp
Average Position of motif in Background48.9 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:HTCCTGSCWGGCV
---CTGTCTGG--
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-HTCCTGSCWGGCV---
NNTNNTGTCTGGNNTNG
 A C G T G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:HTCCTGSCWGGCV
--CTTGGCAA---
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:HTCCTGSCWGGCV
--VBTGWCAGCB-
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:HTCCTGSCWGGCV
--GCTGTCAA---
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---HTCCTGSCWGGCV
RYHYACCTGB------
 A C G T A C G T A C G T G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:HTCCTGSCWGGCV
-VBSYGTCTGG--
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:HTCCTGSCWGGCV
--GCTGTG-----
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---HTCCTGSCWGGCV
CACTTCCTGT------
 A C G T A C G T A C G T G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:HTCCTGSCWGGCV--
TCCCAGMCRAGCCCC
 G A C T C A G T G T A C A G T C A G C T A T C G A T C G A G T C C G T A A C T G A C T G G A T C T C A G A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C