Information for 7-GCAGTRACAA (Motif 12)

A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A
Reverse Opposite:
C G A T C G A T A C T G A C G T A G C T C G T A A G T C A C G T A C T G G T A C
p-value:1e-10
log p-value:-2.410e+01
Information Content per bp:1.838
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.23%
Number of Background Sequences with motif405.9
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets51.1 +/- 27.2bp
Average Position of motif in Background52.0 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GCAGTRACAA-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAGTRACAA--
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAGTRACAA--
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAGTRACAA--
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAGTRACAA---------
TGCAGTTCCNNNNNTGGCCA
 A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GCAGTRACAA
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAGTRACAA
AGATGCAATCCC--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAGTRACAA
TCAGTCTT--
 A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCAGTRACAA
-NCGTGACN-
 A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAGTRACAA--
--GGTGCCAAGT
 A C T G A G T C C G T A A C T G A C G T C T G A T G C A A G T C G C T A C G T A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T