Information for 5-ATGGCATTGT (Motif 10)

G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T
Reverse Opposite:
T C G A G T A C G T C A C T G A C G A T A C T G A G T C G T A C G C T A C G A T
p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.593
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif12.92%
Number of Background Sequences with motif3014.9
Percentage of Background Sequences with motif6.64%
Average Position of motif in Targets46.5 +/- 27.7bp
Average Position of motif in Background50.0 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:forward strand
Alignment:ATGGCATTGT
----CTTTGT
 G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T
A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCATTGT
BNTGDCCTTG-
 A C G T G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:ATGGCATTGT---
---CCWTTGTYYB
 G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATGGCATTGT-
-TGACCTTGAN
 G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ATGGCATTGT---
---CCATTGTTTT
 G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox1/MA0870.1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATGGCATTGT-
AACAATAACATTGTT
 A C G T A C G T A C G T A C G T G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATGGCATTGT-
-TGACCTTGAV
 G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGGCATTGT
AGGVNCCTTTGT
 A C G T A C G T G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ATGGCATTGT---
---CCATTGTTYB
 G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCATTGT---
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T G C T A C G A T A C T G T C A G G T A C G C T A G A C T C A G T A C T G A G C T A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A