Information for 18-CCAAGCTTCG (Motif 47)

A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.220e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.7 +/- 16.8bp
Average Position of motif in Background76.1 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CCAAGCTTCG
-CAAGCTT--
 A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCAAGCTTCG
----GCTTCC
 A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAAGCTTCG---
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G A C G T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCAAGCTTCG
----GCTCCG
 A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGCTTCG
TGCCAA------
 A C G T A C G T A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCAAGCTTCG------
-NTGGTTTCGGTTNNN
 A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCAAGCTTCG
CGTGCCAAG-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCAAGCTTCG
CGCAGCTGCG
 A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAAGCTTCG-----
TNTGGTTTCGATACN
 A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGCTTCG----
NGTCACGCTTGGCTGC
 A C G T A C G T A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C