Information for 25-GAACKTKGCAWMYRWT (Motif 46)

A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
Reverse Opposite:
G T C A G C T A A G T C C T A G A C G T G C A T A C G T A C T G A G T C G T A C C G T A G T A C A T C G A C G T A C G T A G T C
p-value:1e-6
log p-value:-1.471e+01
Information Content per bp:1.814
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.6 +/- 23.7bp
Average Position of motif in Background46.5 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAACKTKGCAWMYRWT
--NNTTGGCANN----
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAACKTKGCAWMYRWT
---CTTGGCAA-----
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAACKTKGCAWMYRWT
TGATGACGTGGCAN-----
 A C G T A C G T A C G T A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAACKTKGCAWMYRWT
TACCATAGCAACGGT-
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAACKTKGCAWMYRWT-
-AACACTGCAATTGTTC
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T A C G T
A C G T C G T A C T G A A G T C G T C A G T A C A G C T A C T G G T A C G T C A G T C A G A C T A G C T A C T G A G C T A C G T G A T C

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GAACKTKGCAWMYRWT
---NTTGGCANN----
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAACKTKGCAWMYRWT
-AACACTGAAATTGTT
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
A C G T T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAACKTKGCAWMYRWT
TGGACTTTGNNCTCN--
 A C G T A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAACKTKGCAWMYRWT
----TTGGCA------
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GAACKTKGCAWMYRWT--
---ATTTGCATACAATGG
 A C T G C G T A C G T A A T G C A C T G A C G T A C T G A C T G G T A C C G T A C G A T G T C A A G T C C T A G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G