Information for 4-YCAGCACCATGGACAG (Motif 4)

A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G A C G T A T G C A G T C C G T A A C G T A C T G C T A G C G A T A C T G A T G C A C G T A C T G C T A G
p-value:1e-13
log p-value:-3.154e+01
Information Content per bp:1.825
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.6 +/- 20.5bp
Average Position of motif in Background29.8 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-YCAGCACCATGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:YCAGCACCATGGACAG----
TCAGCACCATGGACAGCTCC
 A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:YCAGCACCATGGACAG
------CCAGGAACAG
 A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.51
Offset:11
Orientation:reverse strand
Alignment:YCAGCACCATGGACAG-
-----------CACAGN
 A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--YCAGCACCATGGACAG
NGTCAGCANTTT------
 A C G T A C G T A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-YCAGCACCATGGACAG
GTCAGCANNTN------
 A C G T A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----YCAGCACCATGGACAG
TGAGTCAGCA----------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:YCAGCACCATGGACAG---
---------TGCCCAGNHW
 A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

MAFK/MA0496.1/Jaspar

Match Rank:9
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----YCAGCACCATGGACAG
CTGAGTCAGCAATTT------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:forward strand
Alignment:YCAGCACCATGGACAG
-CAGCC----------
 A G T C A G T C C G T A A T C G A G T C C G T A A G T C A G T C G T C A C G A T A C T G A T C G G T C A A T G C C G T A A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T