Information for 13-GCAATGGTAC (Motif 39)

A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
Reverse Opposite:
T C A G C A G T C G T A G T A C G T A C C T G A A C G T C A G T C T A G A G T C
p-value:1e-8
log p-value:-1.928e+01
Information Content per bp:1.768
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif45.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.9 +/- 27.7bp
Average Position of motif in Background55.8 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-3.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCAATGGTAC
VRAACAATGG---
 A C G T A C G T A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCAATGGTAC--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAATGGTAC
AACAAAGG---
 A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAATGGTAC
NNATAAGGNN-
 A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCAATGGTAC
GAACAATGG---
 A C G T A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAATGGTAC
GKTAATGR---
 A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCAATGGTAC
TTATGCAAT-----
 A C G T A C G T A C G T A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
C G A T C A G T C T G A A G C T C T A G G A T C T G C A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAATGGTAC
TGGAATGT---
 A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
G C A T C T A G A C T G G C T A C G T A A C G T A C T G G A C T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAATGGTAC
RACAAWGG---
 A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCAATGGTAC
RAACAATGGN--
 A C G T A C G T A C T G G A T C G T C A G T C A A G C T A C T G A C T G G C A T G T C A A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T