Information for 5-CTGGCACATC (Motif 21)

A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
Reverse Opposite:
A T C G C G T A A G C T A C T G A G C T A C T G A G T C A G T C C T G A C T A G
p-value:1e-10
log p-value:-2.378e+01
Information Content per bp:1.841
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif77.8
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets43.5 +/- 31.6bp
Average Position of motif in Background47.4 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCACATC
TGTCTGDCACCT-
 A C G T A C G T A C G T A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACATC
NTTGGCANN--
 A C G T A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTGGCACATC
CTGTCTGTCACCT-
 A C G T A C G T A C G T A C G T A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGGCACATC
-TGACACCT-
 A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACATC
CTTGGCAA---
 A C G T A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGGCACATC
TTGGCA----
 A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGGCACATC
CCAGGAACAG-
 A C G T A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCACATC
GGTTGGCAT---
 A C G T A C G T A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGGCACATC----
GTGCCACGTCATCA
 A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C A C G T A C G T A C G T A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A

CREB3L1/MA0839.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGGCACATC----
ATGCCACGTCATCA
 A G T C G A C T A C T G C T A G G T A C T C G A G T A C T C G A A C G T A T G C A C G T A C G T A C G T A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A