Information for 3-GGAGCTAAAGCAAAAA (Motif 7)

A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A C G T C A G T A C T G A G T C A G C T A C G T A C G T C T G A A C T G A G T C A C G T A G T C A T G C
p-value:1e-9
log p-value:-2.248e+01
Information Content per bp:1.920
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.5 +/- 27.9bp
Average Position of motif in Background36.5 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGAGCTAAAGCAAAAA--
--TGCCAAAATAAACANN
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

IRF7/MA0772.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGAGCTAAAGCAAAAA-
---ACGAAAGCGAAAGT
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A A C G T
A C G T A C G T A C G T G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GGAGCTAAAGCAAAAA
------WAAGTAAAYA
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGAGCTAAAGCAAAAA
------AAAGTAAACA
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGAGCTAAAGCAAAAA
------AAAGTAAACA
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

PB0182.1_Srf_2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGAGCTAAAGCAAAAA----
---GTTAAAAAAAAAAATTA
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTAAAGCAAAAA
CGGAGC-----------
 A C G T A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGCTAAAGCAAAAA
GRTGMTRGAGCC----
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGAGCTAAAGCAAAAA----
-----CAAAGTAAACANNNN
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GGAGCTAAAGCAAAAA---
----CAATTGCAAAAATAT
 A T C G A C T G G T C A A C T G A G T C A G C T C G T A C G T A C T G A A C T G A G T C G T C A C G T A C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T