Information for 3-GCCCGGCTGHGCT (Motif 6)

A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G G T A C C A T G A T G C C G T A A T C G A T G C A G T C A C T G C T A G A C T G A G T C
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.867
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif34.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets58.2 +/- 27.2bp
Average Position of motif in Background49.2 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGCTGHGCT-
NNTCCTGCTGTGNNN
 A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCCCGGCTGHGCT
GGCCYCCTGCTGDGH-
 A C G T A C G T A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCCGGCTGHGCT
--CCTGCTGAGH-
 A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGCTGHGCT-
TGCCTGCGYCMCCTT
 A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGCTGHGCT
CCCCCTGCTGTG--
 A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGCTGHGCT-
TCNCCTGCTGNGNNN
 A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCCCGGCTGHGCT
ATGCCCGGGCATGT-
 A C G T A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGCTGHGCT-
TNTCCTGCTGTGNNG
 A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCCCGGCTGHGCT------
GTCACGCTTGGCTGCNCNN
 A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCCGGCTGHGCT
GACCCCCCGCTGCGC-
 A C G T A C G T A C G T A C T G A G T C A G T C G T A C A C T G A T C G A T G C A C G T A T C G G A T C A C T G A G T C A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T