Information for 2-TYGCCYTTGCGGA (Motif 2)

A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
Reverse Opposite:
A C G T A G T C A T G C A C T G A G T C C G T A C G T A C T A G A C T G A C T G A G T C C T A G C G T A
p-value:1e-10
log p-value:-2.525e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.5 +/- 26.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TYGCCYTTGCGGA
BNTGDCCTTG----
 A C G T A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TYGCCYTTGCGGA
-TGACCTTGAN--
 A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TYGCCYTTGCGGA
-TGACCTTGAV--
 A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TYGCCYTTGCGGA
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TYGCCYTTGCGGA-
TTGCCCTAGGGCAT
 A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A A C G T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TYGCCYTTGCGGA
---CCTTTGTT--
 A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TYGCCYTTGCGGA
CTGACCTTTG----
 A C G T A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TYGCCYTTGCGGA--
-----TTTGCGGTTT
 A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T

RUNX2/MA0511.2/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TYGCCYTTGCGGA--
------TTGCGGTTT
 A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TYGCCYTTGCGGA
NNACTTGCCTT------
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A T C G A C T G C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T