Information for 4-CACAATAGGC (Motif 7)

G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G C T C G T A A C G T C G A T A C T G A C G T A C T G
p-value:1e-9
log p-value:-2.228e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 28.2bp
Average Position of motif in Background33.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0183.1_Sry_2/Jaspar

Match Rank:1
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------CACAATAGGC-
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CACAATAGGC
GAACAATGG--
 A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CACAATAGGC---
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CACAATAGGC
GACAATGNN-
 G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CACAATAGGC-
CTCACACAATGGCGC
 A C G T A C G T A C G T A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CACAATAGGC
VRAACAATGG--
 A C G T A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CACAATAGGC
GAACAATGGN-
 A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------CACAATAGGC-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CACAATAGGC
RNAACAATGG--
 A C G T A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CACAATAGGC
RAACAATGGN-
 A C G T G T A C C G T A A G T C C G T A C G T A A C G T C T G A C T A G A C T G A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T