Information for 1-CCACCGATCA (Motif 2)

A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G C T A G T C A C T G A C T G A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.882
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.90%
Number of Background Sequences with motif20.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.4 +/- 19.5bp
Average Position of motif in Background50.8 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZBTB7C/MA0695.1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCACCGATCA
GCGACCACCGAA--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A
C T A G T A G C C T A G G T C A G T A C A G T C G T C A G T A C G A T C T C A G G T C A T G C A A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCACCGATCA--
CCATCAATCAAA
 A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCACCGATCA-
GYCATCMATCAT
 A C G T A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

ZBTB7B/MA0694.1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCACCGATCA
GCGACCACCGAA--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A
C T A G T A G C C T A G G T C A T G A C A T G C G T C A G T A C A G T C T C A G G C T A G T C A A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCACCGATCA
TCATCAATCA
 A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACCGATCA
GCCATAAATCA
 A C G T A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCACCGATCA-------
TCACCCATCAATAAACA
 A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCACCGATCA-
---CCAATCAA
 A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

ZBTB7A/MA0750.1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCACCGATCA
GGCGACCACCGA---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A
A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCACCGATCA-
--ACCGATTAG
 A G T C A G T C C G T A T G A C A G T C C T A G C T G A C G A T A G T C C G T A A C G T
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G