Information for 3-GAGCACGCTSTCC (Motif 4)

A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C
Reverse Opposite:
A C T G A T C G C G T A A T C G C G T A A T C G A G T C T A C G A C G T A C T G A G T C C G A T A G T C
p-value:1e-9
log p-value:-2.174e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.2 +/- 17.4bp
Average Position of motif in Background48.9 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGCACGCTSTCC-
NAGAACAGNCTGTNCT
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGCACGCTSTCC--
AGNACANNNTGTNCTN
 A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGCACGCTSTCC
VAGRACAKWCTGTYC
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGCACGCTSTCC--
GVACAGNMTGTYCTB
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

NRF1/MA0506.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGCACGCTSTCC
TGCGCAGGCGC---
 A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T

Ar/MA0007.3/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGCACGCTSTCC--
GGGAACACGGTGTACCC
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGCACGCTSTCC
---CACGCA----
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCACGCTSTCC
GGGAGGACNG-----
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCACGCTSTCC--
GGGAACACAATGTTCCC
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C A C G T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCACGCTSTCC--
GGGTACATAATGTTCCC
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A T G C G A C T A T C G A C G T A T G C A G T C A C G T A C G T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C