Information for 2-CTTGGTGATTAAA (Motif 2)

A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A
Reverse Opposite:
A C G T A G C T A G C T C G T A C G T A A C G T A G T C C G T A A G T C A G T C G T C A C G T A A C T G
p-value:1e-10
log p-value:-2.335e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.5 +/- 25.9bp
Average Position of motif in Background32.9 +/- 8.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTTGGTGATTAAA---
GGAGGTCATTAATTAT
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.63
Offset:7
Orientation:forward strand
Alignment:CTTGGTGATTAAA
-------ATTAAA
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTTGGTGATTAAA----
TAGAGGGATTAAATTTC
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

DUXA/MA0884.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTTGGTGATTAAA----
----NTGATTAAATTAN
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTGGTGATTAAA--
CGTTGGGGATTAGCCT
 A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTTGGTGATTAAA-
----GCAATAAAAA
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTTGGTGATTAAA-
---GGTAATAAAAA
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

MEOX2/MA0706.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTTGGTGATTAAA
---AGTAATTAAC
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A
A C G T A C G T A C G T C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

PH0122.1_Obox2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTTGGTGATTAAA---
TGAGGGGGATTAACTAT
 A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

EVX2/MA0888.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTTGGTGATTAAA
---GGTAATTAGC
 A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A C G A T A C G T C T G A C T G A C G T A
A C G T A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C