Information for 8-YTTTTGRGTSCYK (Motif 14)

A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
Reverse Opposite:
G T A C C T A G T A C G A T G C C G T A A G T C A G T C A G T C C G T A C G T A G T C A C G T A C T G A
p-value:1e-5
log p-value:-1.270e+01
Information Content per bp:1.838
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif34.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets32.6 +/- 19.6bp
Average Position of motif in Background54.4 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-YTTTTGRGTSCYK--
NNNNTTGTGTGCTTNN
 A C G T A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YTTTTGRGTSCYK
--CTTGAGTGGCT
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:YTTTTGRGTSCYK
---TTAAGTGCTT
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YTTTTGRGTSCYK
---TTGAGTGSTT
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YTTTTGRGTSCYK
--CTYRAGTGSY-
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:YTTTTGRGTSCYK----
NATTTAAGTACTTANNA
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YTTTTGRGTSCYK
---TTRAGTGSYK
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YTTTTGRGTSCYK
--BTBRAGTGSN-
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:YTTTTGRGTSCYK
---TTGCGTGCVA
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:YTTTTGRGTSCYK----
-CTTTAAGTACTTAATG
 A G C T A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C G T A T C G A T G C A G T C A C T G A C G T A C G T A C G T A C G T
A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G