Information for 11-CCTTGGCCACAGA (Motif 23)

A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
Reverse Opposite:
A C G T A G T C A C G T A T C G A C G T A C T G C T A G A G T C A G T C C G T A C T G A A C T G A C T G
p-value:1e-7
log p-value:-1.704e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.0 +/- 28.7bp
Average Position of motif in Background47.1 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTTGGCCACAGA
SCCTAGCAACAG-
 A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGCCACAGA
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCCACAGA
TTGCCATGGCAACN--
 A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGCCACAGA
GAGCCCTTGTCCCTAA-
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTTGGCCACAGA
TGACCTTTGCCCCA--
 A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCTTGGCCACAGA
GTTGCCATGGCAACCG-
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCTTGGCCACAGA
--TTGGCA-----
 A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTTGGCCACAGA-
---AAACCACAGAN
 A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A A C G T
A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCCACAGA
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCCACAGA
-NTTGGCANN---
 A G T C A G T C A G C T A C G T A C T G A C T G A G T C A G T C G T C A A T G C C G T A A C T G G T C A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T