Information for 13-GGAGCTCGKYCAA (Motif 22)

A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
Reverse Opposite:
C A G T A C G T T A C G T C G A G T C A A G T C A C T G C T G A A C T G G A T C C A G T A T G C G T A C
p-value:1e-9
log p-value:-2.288e+01
Information Content per bp:1.698
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif26.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets59.3 +/- 22.5bp
Average Position of motif in Background46.2 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTCGKYCAA
CGGAGC--------
 A C G T A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGAGCTCGKYCAA-
---GCTCGTAAAAA
 A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A A C G T
A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGAGCTCGKYCAA
--AAYTAGGTCA-
 A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAGCTCGKYCAA
--NGCTN------
 A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGAGCTCGKYCAA---
AAACCTCGTAAAATTT
 A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGAGCTCGKYCAA
TATAAGTAGGTCAA
 A C G T A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGAGCTCGKYCAA
---GCTCGGSCTC
 A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
A C G T A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGAGCTCGKYCAA---
AAAGCTCGTAAAATTT
 A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PB0200.1_Zfp187_2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GGAGCTCGKYCAA--
GAGCCCTTGTCCCTAA
 A C G T A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTCGKYCAA
NGAAGC--------
 A C G T A C T G T A C G G C T A C A T G A G T C A G C T G T A C T A C G C A G T A G C T A G T C G T C A G C T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T