Information for 7-TBCCAGGCWGGCT (Motif 14)

A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T
Reverse Opposite:
C T G A A T C G A G T C A G T C G C T A A C T G A T G C G T A C C G A T T C A G C T A G T C G A T C G A
p-value:1e-11
log p-value:-2.617e+01
Information Content per bp:1.658
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.19%
Number of Background Sequences with motif303.4
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets53.6 +/- 22.9bp
Average Position of motif in Background51.3 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TBCCAGGCWGGCT--
TCCCAGMCRAGCCCC
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:TBCCAGGCWGGCT
-----GGCGCGCT
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TBCCAGGCWGGCT
---TWGTCTGV--
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TBCCAGGCWGGCT----
---CTGGCAGNCTGCCA
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TBCCAGGCWGGCT
--CCAGACAG---
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TBCCAGGCWGGCT--
GTCATGCHTGRCTGS
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TBCCAGGCWGGCT
ATGCCCGGGCATGT-
 A C G T A C G T A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TBCCAGGCWGGCT
--CCAGACRSVB-
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TBCCAGGCWGGCT-
---AAGGCAAGTGT
 A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TBCCAGGCWGGCT---
NNTNNTGTCTGGNNTNG
 A C G T A G C T A G C T G A T C A G T C G C T A A C T G T A C G G T A C C G A T C T A G C T A G T A G C G A C T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G