Information for 8-GCATTAATGG (Motif 10)

C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G
Reverse Opposite:
A G T C A G T C G C T A A C G T A C G T T C G A C T G A A G C T A C T G A G T C
p-value:1e-11
log p-value:-2.661e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 17.0bp
Average Position of motif in Background35.6 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCATTAATGG-
---CTAATKGV
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GCATTAATGG--
--GTTAATGGCC
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G A C G T A C G T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCATTAATGG
--GKTAATGR
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G
A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCATTAATGG-----
-CCTTAATNGNTTTT
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

HOXA5/MA0158.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCATTAATGG
-CACTAATT-
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G
A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCATTAATGG-----
ANNCATTAATTGCTNGN
 A C G T A C G T C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCATTAATGG-----
ANNCATTAATTGCTNGN
 A C G T A C G T C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCATTAATGG-
---NTAATTGN
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCATTAATGG
--ATTAAA--
 C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCATTAATGG
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T C T A G A G T C C T G A A G C T A G C T C G T A C G T A C A G T A C T G A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T