Information for 6-AGCCAGGCAGGAA (Motif 10)

G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A
Reverse Opposite:
A G C T A G C T A T G C G A T C G C A T A T C G A G T C G A T C G C A T C T A G A C T G G A T C C G A T
p-value:1e-9
log p-value:-2.263e+01
Information Content per bp:1.535
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif65.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets50.7 +/- 22.5bp
Average Position of motif in Background52.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCCAGGCAGGAA-
CAAATCCAGACATCACA
 A C G T A C G T A C G T G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAGGCAGGAA
SCAGYCADGCATGAC
 A C G T A C G T G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGCCAGGCAGGAA
--CCAGACAG---
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGCCAGGCAGGAA-
---AAGGCAAGTGT
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGCCAGGCAGGAA
---CWGGCGGGAA
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A
A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AGCCAGGCAGGAA---
------ACAGGAAGTG
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGCCAGGCAGGAA--
-----NACAGGAAAT
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAGGCAGGAA
ATGCCAGACN----
 A C G T G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGCCAGGCAGGAA--
-----NACAGGAAAT
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGCCAGGCAGGAA
--CCAGACRSVB-
 G C T A C T A G T G A C G A T C C G T A C T A G T C A G T A G C C G T A C T A G T A C G T C G A T C G A
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T