Information for 6-RTCTTGYTKGKTG (Motif 4)

C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A G T C A A G T C G T A C C G T A C T A G A T G C C G T A C G T A A C T G C G T A A G C T
p-value:1e-13
log p-value:-3.150e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 27.8bp
Average Position of motif in Background12.2 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0093.1_Zfp105_1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RTCTTGYTKGKTG--
NTNTTGTTGTTTGTN
 C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T A C G T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RTCTTGYTKGKTG-
--TTTGATTGATGN
 C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T
A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---RTCTTGYTKGKTG-
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RTCTTGYTKGKTG-
TCNCCTGCTGNGNNN
 A C G T C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RTCTTGYTKGKTG-
TNTCCTGCTGTGNNG
 A C G T C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RTCTTGYTKGKTG-
GTCACGCTCNCTGA
 C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--RTCTTGYTKGKTG
NNNTGTTGTTGTTNG
 A C G T A C G T C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RTCTTGYTKGKTG
GGTCTGGCAT----
 A C G T C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:RTCTTGYTKGKTG
---TTGATTGN--
 C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RTCTTGYTKGKTG--
---ATGATKGATGRC
 C T G A A C G T A G T C A C G T C G A T A T C G A G T C A C G T A C T G A C T G A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C