Information for 9-CMMCATTSTTSAAKSA (Motif 11)

A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
Reverse Opposite:
A C G T A T G C G T A C A C G T A C G T A T C G C G T A C G T A A T C G C G T A G T C A A C G T A C T G A C G T A C T G A C T G
p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 23.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CMMCATTSTTSAAKSA
-NCCATTGTTC-----
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CMMCATTSTTSAAKSA-
NAAANTTATTGAANCAN
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CMMCATTSTTSAAKSA
--CCATTGTTC-----
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CMMCATTSTTSAAKSA
ANNTCCATTGTTCNNN--
 A C G T A C G T A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CMMCATTSTTSAAKSA
-NCCATTGTTY-----
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CMMCATTSTTSAAKSA
--CCATTGTTYB----
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CMMCATTSTTSAAKSA
TGTTCCCATTGTGTACT--
 A C G T A C G T A C G T A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CMMCATTSTTSAAKSA
TTCAATTGTTCTAAAA
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CMMCATTSTTSAAKSA
----ATTGTTA-----
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CMMCATTSTTSAAKSA
----ATTGTT------
 A G T C G T A C G T C A A G T C C G T A A C G T A C G T A T G C A C G T A C G T A T G C C G T A C G T A C A G T A T C G G T C A
A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T