Information for 8-TGCAGAAAAAAAA (Motif 11)

G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A
Reverse Opposite:
A C G T A C G T A C G T C G A T G C A T C G A T A G C T A G C T A T G C A G C T C T A G A G T C C G T A
p-value:1e-12
log p-value:-2.771e+01
Information Content per bp:1.635
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif165.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets47.7 +/- 28.3bp
Average Position of motif in Background50.7 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0186.1_Tcf3_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGCAGAAAAAAAA--
AGCCGAAAAAAAAAT
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A A C G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGCAGAAAAAAAA-
TACTGGAAAAAAAA
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A A C G T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCAGAAAAAAAA-----
-GTTAAAAAAAAAAATTA
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGCAGAAAAAAAA
CAATTGCAAAAATAT--
 A C G T A C G T A C G T A C G T G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGCAGAAAAAAAA-----
-GTTCAAAAAAAAAATTC
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TGCAGAAAAAAAA
---GCAATAAAAA
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A
A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGAAAAAAAA---
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A C G T G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGCAGAAAAAAAA
---CCAATAAAAA
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGCAGAAAAAAAA---
TGCCAAAATAAACANN
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGCAGAAAAAAAA
---CCAATAAAAA
 G C A T T C A G G A T C T C G A A T C G T C G A C T G A C G T A C G T A C G T A G T C A T C G A T G C A
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A