Information for 5-TTTGCCTGCTGCMGAR (Motif 8)

A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
Reverse Opposite:
A G C T A G C T A G T C A C T G A C T G G T A C C G T A T A C G A G T C C G T A A C T G A C T G A T G C G C T A G T C A G T C A
p-value:1e-11
log p-value:-2.636e+01
Information Content per bp:1.745
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.0 +/- 25.7bp
Average Position of motif in Background61.4 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
TTGGCATGGTGCCA--
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTTGCCTGCTGCMGAR
-NNVVCAGCTGBN---
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
-TNTCCTGCTGTGNNG
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
-TCNCCTGCTGNGNNN
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTTGCCTGCTGCMGAR
ATTGCCTCAGGCAAT-
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
--NNVCAGCTGB----
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
A C G T A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
-CCACCTGTTGCAT--
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
TTGGCANNNTGCCAAG
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TTTGCCTGCTGCMGAR
--TGCCTGAGGCN---
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TTTGCCTGCTGCMGAR-
CTCAGCAGCTGCTACTG
 A C G T A C G T C A G T T A C G A G T C A G T C C G A T A C T G A T G C A C G T A C T G A G T C G T A C T C A G C T G A T C G A A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G