Information for 5-ATGTTTGWWTTGG (Motif 6)

G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C T G A C G A T C G T A A G T C C G T A C G T A G T C A A G T C C G T A A C G T
p-value:1e-13
log p-value:-3.127e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 21.9bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-ATGTTTGWWTTGG--
NNTGTTTATTTTGGCA
 A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G A C G T A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATGTTTGWWTTGG
GAATGTTTGTTT---
 A C G T A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATGTTTGWWTTGG
-TGTTTATTT---
 G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGWWTTGG---
NSTGTTTRCWCAGBNNN
 A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATGTTTGWWTTGG
-TGTTTACTTAGG
 G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATGTTTGWWTTGG
TCCATGTTTACTTTG-
 A C G T A C G T A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATGTTTGWWTTGG
-TGTTTACTTT--
 G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGWWTTGG
TTTGTTTACTTA--
 A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATGTTTGWWTTGG
-TGTTTACTTT--
 G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGWWTTGG
CBTGTTTAYAWW--
 A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C T G C G A T C G T A A G C T A C G T A C T G A C T G
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T A C G T