Information for 5-GGATCCAGGAGAA (Motif 10)

A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
Reverse Opposite:
A G C T A G C T A T G C C G A T A G T C A T G C C G A T A C T G A C T G C G T A C G A T A G T C A G T C
p-value:1e-14
log p-value:-3.234e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.3 +/- 32.1bp
Average Position of motif in Background29.7 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGATCCAGGAGAA
NNNGTAACTANGNNA-
 A C G T A C G T A C G T A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGATCCAGGAGAA
AGGAAACAGCTG--
 A C G T A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGATCCAGGAGAA
AGGTCAAGGTCA-
 A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGATCCAGGAGAA-----
--ATTTACGACAAATAGC
 A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GGATCCAGGAGAA
--ATCAAGGTCA-
 A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:6
Score:0.51
Offset:-7
Orientation:reverse strand
Alignment:-------GGATCCAGGAGAA
NNNNGGGGGAAGANGG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GGATCCAGGAGAA
------TGGAAAA
 A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GGATCCAGGAGAA-
----VCAGGTRDRY
 A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A A C G T
A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

REST/MA0138.2/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GGATCCAGGAGAA----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------GGATCCAGGAGAA---
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A G A C T G T A C G T A C C G T A A T C G A C T G C G T A A T C G C T G A C T G A A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T