Information for 2-RAACAAACAG (Motif 3)

C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
Reverse Opposite:
A T G C C A G T C A T G A G C T A C G T A C G T T A C G A G C T G A C T G A C T
p-value:1e-28
log p-value:-6.549e+01
Information Content per bp:1.634
Number of Target Sequences with motif296.0
Percentage of Target Sequences with motif39.21%
Number of Background Sequences with motif9804.0
Percentage of Background Sequences with motif21.25%
Average Position of motif in Targets49.1 +/- 27.3bp
Average Position of motif in Background50.1 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0016.1_Foxj1_1/Jaspar

Match Rank:1
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----RAACAAACAG-
AAAGTAAACAAAAATT
 A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----RAACAAACAG---
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

FOXP1/MA0481.1/Jaspar

Match Rank:3
Score:0.76
Offset:-7
Orientation:forward strand
Alignment:-------RAACAAACAG
CAAAAGTAAACAAAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:RAACAAACAG
-AACAAT---
 C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:RAACAAACAG--
AAACAAACATTC
 C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G A C G T A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----RAACAAACAG---
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Foxj3/MA0851.1/Jaspar

Match Rank:7
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------RAACAAACAG
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:8
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------RAACAAACAG
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-RAACAAACAG
GGAACAAAGR-
 A C G T C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:RAACAAACAG
AAATAAACA-
 C T G A C T G A C T G A A T G C C G T A T G C A C T G A G T A C G T C A T A C G
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T