Information for 9-TGACAGTCTG (Motif 13)

A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
Reverse Opposite:
G T A C C G T A C T A G G C T A G A T C A C G T C T A G A C G T A G T C C G T A
p-value:1e-8
log p-value:-2.067e+01
Information Content per bp:1.832
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif233.1
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets50.2 +/- 25.6bp
Average Position of motif in Background49.8 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGACAGTCTG
TTGACAG----
 A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGACAGTCTG
TTGACAGG---
 A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGACAGTCTG
VBTGWCAGCB--
 A C G T A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGACAGTCTG
TTGACAGC---
 A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGACAGTCTG
RHTGWCAR----
 A C G T A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGACAGTCTG
TGGCAGTTGN
 A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGACAGTCTG
ARNTGACA-----
 A C G T A C G T A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGACAGTCTG
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGACAGTCTG
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGACAGTCTG-
---CTGTCTGG
 A C G T A C T G T G C A A G T C C G T A C T A G C G A T A G T C C G A T A C T G A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G