Information for 11-CACAACVCTAGAGATC (Motif 28)

A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
Reverse Opposite:
C T A G C T G A A G C T A G T C A G C T A T G C A G C T T G C A A T C G A C G T C T A G A G C T C G A T C T A G A C G T A C T G
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.741
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 23.8bp
Average Position of motif in Background24.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CACAACVCTAGAGATC
GAGCACAGCAGGACA----
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CACAACVCTAGAGATC
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CACAACVCTAGAGATC
NWAACCACADNN---------
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CACAACVCTAGAGATC
CTCACACAATGGCGC-----
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CACAACVCTAGAGATC
CACAGCAGGGGG----
 A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CACAACVCTAGAGATC
AAACCACAGAN---------
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CACAACVCTAGAGATC
ATGTCACAACAACAC-----
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CACAACVCTAGAGATC
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CACAACVCTAGAGATC
AAACCACAGC----------
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--CACAACVCTAGAGATC
RNAACAATGG--------
 A C G T A C G T A G T C G T C A A G T C C G T A T C G A A G T C T G C A A T G C A C G T T C G A T A C G C T G A A C T G T C G A G A C T A G T C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T