Information for 13-AACCCAGCGG (Motif 43)

C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T
p-value:1e-3
log p-value:-8.099e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets27.3 +/- 29.5bp
Average Position of motif in Background39.5 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL001.1_MTE/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AACCCAGCGG----
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AACCCAGCGG------
-DCHCAGCAGGRGGCC
 C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AACCCAGCGG----
CCACACAGCAGGAGA
 A C G T C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AACCCAGCGG-
-DCTCAGCAGG
 C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AACCCAGCGG----
CCACACAGCAGGAGA
 A C G T C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AACCCAGCGG---
---CCAGCTGTTN
 C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACCCAGCGG----
GAGCACAGCAGGACA
 A C G T C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AACCCAGCGG-
-NAHCAGCTGD
 C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AACCCAGCGG----
--CACAGCAGGGGG
 C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AACCCAGCGG-
GTCCCCAGGGGA
 A C G T C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C T G A C T G A C G T
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A