Information for 25-TTCAAAATTGGGT (Motif 42)

A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A
p-value:1e-5
log p-value:-1.219e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.7 +/- 18.7bp
Average Position of motif in Background54.4 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTCAAAATTGGGT
NATTCAAAT------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TTCAAAATTGGGT
CGGTTTCAAA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTCAAAATTGGGT
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTCAAAATTGGGT
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTCAAAATTGGGT--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTCAAAATTGGGT---
--TATAAGTAGGTCAA
 A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTCAAAATTGGGT-
TATCATAATTAAGGA
 A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTCAAAATTGGGT-
TNCCATATATGGNA
 A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TTCAAAATTGGGT
CAATTGCAAAAATAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TTCAAAATTGGGT--
-----AAYTAGGTCA
 A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A