Information for 25-RGYGCSYGACSMCGGC (Motif 38)

C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C
Reverse Opposite:
A C T G A T G C A G T C A C T G A C G T A T C G A C T G A C G T A G T C C T G A A T C G A C T G A G T C C T A G A G T C A G C T
p-value:1e-7
log p-value:-1.703e+01
Information Content per bp:1.854
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.0 +/- 15.4bp
Average Position of motif in Background34.4 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RGYGCSYGACSMCGGC
-GGGCGGGACC-----
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C
A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:RGYGCSYGACSMCGGC--
-NNNNTTGACCCCTNNNN
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C A C G T A C G T
A C G T C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RGYGCSYGACSMCGGC
AGGTGHCAGACA-----
 A C G T C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RGYGCSYGACSMCGGC
---NCGTGACN-----
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RGYGCSYGACSMCGGC--
--NNNNTGACCCGGCGCG
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C A C G T A C G T
A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RGYGCSYGACSMCGGC--
-TGTCGTGACCCCTTAAT
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C A C G T A C G T
A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----RGYGCSYGACSMCGGC
ATAAAGGCGCGCGAT------
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:RGYGCSYGACSMCGGC------
-------GACCACGCCCTTATT
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:RGYGCSYGACSMCGGC--
--NNCNTGACCCCGCTCT
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C A C G T A C G T
A C G T A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:RGYGCSYGACSMCGGC
----GGCGACCACCGA
 C T A G A C T G A G T C A C T G A G T C A T C G A G C T A C T G C G T A A G T C A T G C G T A C A G T C A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A