Information for 3-GCGGGGCGCTGTGCBC (Motif 2)

A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
Reverse Opposite:
A C T G T A G C A C T G A T G C C T G A A T G C C T G A A C T G G T A C A C T G G T A C A G T C G T A C A G T C A C T G A G T C
p-value:1e-16
log p-value:-3.761e+01
Information Content per bp:1.867
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.4 +/- 22.2bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GCGGGGCGCTGTGCBC
-------GCTGTG---
 A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GCGGGGCGCTGTGCBC
GGGGGCGGGGCC--------
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GCGGGGCGCTGTGCBC--
--------CTGTTCCTGG
 A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GCGGGGCGCTGTGCBC
DGGGYGKGGC---------
 A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GCGGGGCGCTGTGCBC
CAAAGGCGTGGCCAG------
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GCGGGGCGCTGTGCBC
TGCGTG-----------
 A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCGGGGCGCTGTGCBC
--AGGTCANTGACCTN
 A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.50
Offset:-8
Orientation:reverse strand
Alignment:--------GCGGGGCGCTGTGCBC
GGGNGGGGGCGGGGC---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Klf4/MA0039.2/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GCGGGGCGCTGTGCBC
TGGGTGGGGC---------
 A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------GCGGGGCGCTGTGCBC
NAGANTGGCGGGGNGNA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C T G A G T C A G C T A T C G A G C T A T C G A G T C A C T G A G T C
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T