Information for 18-TTCACHCTAABAGMAT (Motif 17)

A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
Reverse Opposite:
T C G A C A G T C A G T T A G C C G A T T C G A C G A T A G C T C G T A T C A G C T G A C T A G A C G T A T C G G T C A T C G A
p-value:1e-9
log p-value:-2.292e+01
Information Content per bp:1.640
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.0 +/- 23.2bp
Average Position of motif in Background59.0 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TTCACHCTAABAGMAT--
----CCTTAATNGNTTTT
 A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TTCACHCTAABAGMAT
------CTAATKGV--
 A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTCACHCTAABAGMAT
MRSCACTYAA-------
 A C G T A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TTCACHCTAABAGMAT
-TCAGTCTT-------
 A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------TTCACHCTAABAGMAT
TACATGTGCACATAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TTCACHCTAABAGMAT
-----GCTAATTGCT-
 A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TTCACHCTAABAGMAT
CGAAGCACACAAAATA---
 A C G T A C G T A C G T A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----TTCACHCTAABAGMAT
NAGTTTCABTHTGACTNW--
 A C G T A C G T A C G T A C G T A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TTCACHCTAABAGMAT
NSCACTYVAV------
 A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--TTCACHCTAABAGMAT
CTTTCANTATGACTV---
 A C G T A C G T A C G T C A G T A T G C C G T A G A T C G A C T A G T C C G A T C T G A C G T A A G C T G C T A A T C G G T C A G T C A A G C T
A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C A C G T A C G T A C G T